satijalab / seurat
R toolkit for single cell genomics
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R toolkit for single cell genomics
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Community-provided extensions to Seurat
R package for performing 2-sample MR using MR-Base database
Repository for Programming Assignment 2 for R Programming on Coursera
dplyr: A grammar of data manipulation
Accurate sample inference from amplicon data with single nucleotide resolution
Make Complex Heatmaps
Produce PRISMA-2020 compliant flow diagrams
Simple Features for R
📊 A universal enrichment tool for interpreting omics data
R toolkit for the analysis of single-cell chromatin data
Interfaces for HDF5-based Single Cell File Formats
Inferring CNV from Single-Cell RNA-Seq
Easy interactive web applications with R
NicheNet: predict active ligand-target links between interacting cells
The Predictive Ecosystem Analyzer (PEcAn) is an integrated ecological bioinformatics toolbox.