Nick Tarazona, MD’s Post

MATLAB program for designing of Microstrip patch antenna optimized using Genetic Algorithm. Implement GA to find optimal patch dimensions for desired performance parameters (gain, S11, bandwidth). https://lnkd.in/g22j5uT2

Sharing a couple of new comparative genomics tools made by Artyom Egorov in my group! First we have loVis4u for visualising and comparing phage genomes (or other genomic regions). It sensitivity identifies protein homology and outputs beautiful vector graphics https://lnkd.in/dtKVb_cD Then we have iLund4u, which automatically finds regions of diversity (islands or hotspots) where for example virulence, mobile genetic element defence or counter defence can be encoded. https://lnkd.in/dX3_vw4U

For all of my Curio Seeker customers, come listen to our head of bioinformatics for tips and tricks on dry lab analysis of your data! #genomics #rna #mrna #genes #spatialtranscriptomics #spatialbiology #spatialphenotyping #spatialgenomics #spatial #spatialanalysis #transcriptomics #singlecell #scrnaseq #rnaseq #ngs #multiomics #sequencing #illumina #transcripts #molecularbiology  #biomarker #biomarkers #genetherapy #geneediting #celltherapy #translationalresearch #stomics #visium #merfish #ish #rnaish #smfish #slideseq #slideseqV2 #SingleCellRNASeq #plantresearch #epigenetics #plantbiology #plantgenetic #phytopathology #plantscience #plantpathology #regeneration #neuro #neurology #development #nervoussystem #cns #bioinformatics #bioinformatician #spinalcord #neurons #neuron #neural #neuroscience #stemcellresearch #tcr #rcc #melanoma #immunesystem #immunology #immunooncology #immunehealth #immunotherapies #immuneresponse #lung #lungcancer #lungcancerresearch #spleen #tumor #tumormicroenvironment #cancer #pathology #oncology #oncologyresearch #cancerresearch #parkinsonsdisease #parkinsons #parkinsonsawareness #parkinsonsresearch #dopamine #cardiovascular #pathogen #pathogens #virology #viral #cardiac #cardiology #cardiovasculardisease #inflammation #stress #infectiousdiseases #infectiousdisease #colorectalcancer #aging #transplant #organoid #embryo #visionscience #tuberculosis #FTD #ALS #alzheimersresearch #alzheimersdisease #cognition #ucsf #gladstone #stanford #ucberkeley #ucdavis #ucsc #buckinstitute #ucb #ohsu #uw #ucla #usc #ucriverside #ucsb #cityofhope #uci #ucsd #caltech #genentech #gilead #calico #amgen #bms #gsk #tgen #allen #biopharma #biotech

I want to let you know about the latest version of the QGA R package (https://lnkd.in/dwuzEU_Q). The package is an R implementation of the Quantum Genetic Algorithm defined by Han and Kim (2000). A complete illustration of the package, together with examples of application, can be found at https://lnkd.in/dyZUasRy

New framework leverages genetic programming to uncover partial differential equations from limited and noisy datasets #GeneticProgramming #DataScience #MachineLearning #PartialDifferentialEquations #SymbolicRegression #ResearchInnovation #ComputationalPhysics Link: https://lnkd.in/e_AsT4-P

I am happy to announce that our two papers accepted at ETS'24 are now available on IEEEXplore: The first paper focuses on using a new approach based on Genetic Programming to generate Test Programs for System-Level Test (SLT), maximizing the power consumption of our DUT. https://lnkd.in/e4fP5Uyj The second paper demonstrates that we can use Large Language Models to generate programs for SLT that instead target the Instructions per Cycle of our DUT in microarchitectural simulation. For this purpose, we have fine-tuned a model based on Meta's Llama 2. https://lnkd.in/eUcHccMj

🆕 journal club by Nick Eagles "#Bin2cell reconstructs cells from high resolution #VisiumHD data" by Polański Raquel Bartolomé Casado et al from Sarah Teichmann FMedSci FRS & nadav yayon labs 📜 https://lnkd.in/gUEy_w2q 🛝 https://lnkd.in/gcTH8rPU 📽️ https://lnkd.in/gbk4xP_S Summary by Nick: > Bin2cell leverages subcellular 2um-resolution Visium HD data to aggregate expression from bins into individual cells, allowing single-cell, spatially resolved data analysis downstream for Visium HD experiments. It's a python package that includes a handful of functions for segmentation, expression aggregation, and also correction of a Visium HD technical effect where individual rows and columns differ in total expression. 10x Genomics

This Thursday! Curio webinar on data analysis tools for spatial biology. Don't miss it! #genomics #rna #mrna #spatialbiology #dataanalysis #spatialtranscriptomics #spatialgenomics #spatial #spatialanalysis #transcriptomics #singlecell #scrnaseq #rnaseq #ngs #multiomics #sequencing #biomarker #biomarkers #slideseq #slideseqV2 #SingleCellRNASeq #regeneration #development #bioinformatics #bioinformatician #neuroscience #stemcellresearch #tumormicroenvironment #cancer #oncology #parkinsonsdisease #Alzheimers

In this video, I am going to show you my innovative version of Genetic Algorithm, which I call: Adaptive Re-start Hybrid Genetic Algorithm. This Genetic Algorithm is coded in Matlab. Let’s see how this Genetic Algorithm works in solving a difficult benchmark optimization problem. #GeneticAlgorithm, #Optimization, #OptimizationMethod, #OptimizationTechnique

Attention, bioinformatics enthusiasts! Join Wanxin Wang as she dives into the process of transforming raw pipeline output into actionable biological insights on January 30. If you're interested in learning how to bridge the gap between computational data and meaningful biological interpretation, this is for you! #curiobioscience #spatialtranscriptomics #singlecell