satijalab / seurat
R toolkit for single cell genomics
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R toolkit for single cell genomics
R for data science: a book
Inferring CNV from Single-Cell RNA-Seq
Accurate sample inference from amplicon data with single nucleotide resolution
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
A lightweight, cross-platform, portable, and easy-to-maintain LaTeX distribution based on TeX Live
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
R's data.table package extends data.frame:
NicheNet: predict active ligand-target links between interacting cells
Easy interactive web applications with R
📊 A universal enrichment tool for interpreting omics data
The Composer of ggplots
Community-provided extensions to Seurat
R toolkit for the analysis of single-cell chromatin data
renv: Project environments for R.